PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr005504.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 211aa    MW: 22505.8 Da    PI: 5.0144
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr005504.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.81e-163584255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                  y+G+r+++ +g+Wv+eIr+p+    +  r++lg+f t+e+Aa a++ a+ +l+g
  Pbr005504.1 35 TYRGIRRRS-SGKWVSEIREPK----KpNRIWLGTFSTPEMAAVAYDVAAIALKG 84
                 69****888.8*********94....468**********************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.8E-293594IPR001471AP2/ERF domain
PROSITE profilePS5103221.7863592IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-193594IPR016177DNA-binding domain
PfamPF008473.8E-93584IPR001471AP2/ERF domain
SMARTSM003801.3E-333598IPR001471AP2/ERF domain
PRINTSPR003675.1E-83647IPR001471AP2/ERF domain
CDDcd000181.28E-293694No hitNo description
PRINTSPR003675.1E-85874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MYTTNTTTTS SSTGSTTTTS SSTGSTTTST GRHPTYRGIR RRSSGKWVSE IREPKKPNRI  60
WLGTFSTPEM AAVAYDVAAI ALKGQGAELN FPNSASSLPV PASTSPRDIQ AAASSAAAAM  120
GVAIDHGSYS RSEVQGDQQD AHQAHKTVDE ADRLMLNQEF VDEELIFNMP NVLVNMAEGM  180
LLSPPRLDIA GDDAIVGDQE QGDHNLWKFN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-152997168ATERF1
3gcc_A7e-152997168ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009365379.11e-156PREDICTED: ethylene-responsive transcription factor ERF024-like
SwissprotQ9SJR04e-57ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLM5VT949e-86M5VT94_PRUPE; Uncharacterized protein
STRINGPOPTR_0006s02180.14e-72(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.16e-45ERF family protein